Publications

Academic publications

Claire Duvallet, Sean M. Gibbons, Thomas Gurry, Rafael A. Irizarry, and Eric J. Alm. “Meta-analysis of gut microbiome studies identifies disease-specific and shared responses.” Nature Communications (2017). doi: 10.1038/s41467-017-01973-8, bioRxiv doi: 10.1101/134031. Associated github: cduvallet/microbiomeHD and data: zenodo record 840333.

Scott W. Olesen, Claire Duvallet, and Eric J. Alm. “dbOTU3: A new implementation of distribution-based OTU calling.” PloS one 12, no. 5 (2017): e0176335. doi: 10.1371/journal.pone.0176335

Sean M. Gibbons, Claire Duvallet, and Eric J. Alm. “Correcting for batch effects in case-control microbiome studies.” bioRxiv (2017): 165910. bioRxiv doi: 10.1101/165910

Other

[Blog post] Claire Duvallet. “Beyond dysbiosis: disease-specific and shared microbiome responses to disease. Nature Microbiology Community Forum. December 2017.

[Dataset] Claire Duvallet, Sean M. Gibbons, Thomas Gurry, Rafael A. Irizarry, and Eric J. Alm. (2017). MicrobiomeHD: the human gut microbiome in health and disease. Zenodo. doi: 10.5281/zenodo.797943

 

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